GEP Data Repository
About This Page
The Data Repository contains links to all the files for the GEP annotation and finishing projects. The tables below provides a brief explanation for some of the files you will find in the repository.
Table Of Contents
TSS Repository
Link to Directory | Description |
---|---|
tss / drosophila_elegans / dot_chromosome | Files for the Jan. 2015 D. elegans dot chromosome TSS projects. (TSS projects created in January 2018.) |
tss / drosophila_biarmipes / dot_chromosome_v2 | Files for the Aug. 2013 D. biarmipes dot chromosome TSS projects. (TSS projects created in August 2015.) |
tss / drosophila_biarmipes / 3L_control | Files for the Jan. 2014 D. biarmipes 3L chromosome control region TSS projects. (TSS projects created in August 2017.) |
Annotation Repository
Link to Directory | Description |
---|---|
drosophila_takahashii / dot_chromosome | Files for the D. takahashii dot chromosome annotation projects (Jan. 2018 release). |
drosophila_takahashii / 3L_control | Files for the D. takahashii 3L chromosome control region annotation projects (Aug. 2018 release). |
drosophila_takahashii / 2L_control | Files for the D. takahashii 2L chromosome control region annotation projects (Jan. 2019 release). |
drosophila_eugracilis / dot_chromosome | Files for the D. eugracilis dot chromosome annotation projects (Jan. 2017 release). |
drosophila_eugracilis / 3L_control | Files for the D. eugracilis 3L chromosome control region annotation projects (Aug. 2017 release). |
drosophila_ficusphila / dot_chromosome | Files for the D. ficusphila dot chromosome annotation projects (Jan. 2016 release). |
drosophila_ficusphila / 3L_control | Files for the D. ficusphila 3L chromosome control region annotation projects (Aug. 2016 release). |
drosophila_elegans / dot_chromosome | Files for the D. elegans dot chromosome annotation projects (Jan. 2015 release). |
drosophila_elegans / 3L_control | Files for the D. elegans 3L chromosome control region annotation projects (Aug. 2015 release). |
drosophila_biarmipes / dot_chromosome_v2 | Files for the D. biarmipes dot chromosome annotation projects (Aug. 2013 release). |
drosophila_biarmipes / 3L_control | Files for the D. biarmipes 3L chromosome control region annotation projects (Jan. 2014 release). |
drosophila_biarmipes / dot_chromosome | Files for the D. biarmipes dot chromosome annotation projects (Aug. 2012 release). (This assembly has been replaced by the Aug. 2013 release.) |
drosophila_ananassae / 3L_control | Files for the D. ananassae 3L chromosome control region annotation projects (Jan. 2013 release). |
drosophila_erecta / dot_chromosome | Files for the D. erecta dot chromosome annotation projects (Aug. 2006 release). |
drosophila_erecta / 3L_control | Files for the D. erecta 3L chromosome control region annotation projects (Apr. 2007 release). |
drosophila_erecta / 2nd3L_control | Files for the second D. erecta 3L chromosome control region annotation projects (Nov. 2011 release). |
drosophila_erecta / 3L_extended | Files for the D. erecta 3L chromosome extended region annotation projects (Jan. 2008 release). |
drosophila_erecta / 3L_extended2 | Files for the second D. erecta 3L chromosome extended region annotation projects (Sep. 2011 release). |
drosophila_mojavensis / dot_chromosome | Files for the D. mojavensis dot chromosome (Sep. 2008 release). |
drosophila_mojavensis / 3L_control | Files for the D. mojavensis 3L chromosome control region (Apr. 2011 release). |
drosophila_grimshawi / dot_chromosome | Files for the D. grimshawi dot chromosome (Sep. 2010 release). |
Finishing Repository - Hybrid Assemblies
Link to Directory | Description |
---|---|
D. takahashii Finishing Packages | Finishing packages containing the project files for all the D. takahashii assemblies. |
D. eugracilis Finishing Packages | Finishing packages containing the project files for all the D. eugracilis assemblies. |
D. ficusphila Finishing Packages | Finishing packages containing the project files for all the D. ficusphila assemblies. |
D. elegans Finishing Packages | Finishing packages containing the project files for all the D. elegans assemblies. |
D. biarmipes Finishing Packages | Finishing packages containing the project files for all the D. biarmipes assemblies. |
Spring 2014 Reaction Results | Additional sequencing reaction results for the D. biarmipes sequence improvement projects in Spring 2014. |
Finishing Repository - Drosophila ananassae Muller F element
Link to Directory | Description |
---|---|
Finishing Packages | Finishing packages containing the project files for all the D. ananassae fosmid projects. |
Spring 2011 Reaction Results | Additional sequencing reaction results for the D. ananassae sequence improvement projects in Spring 2011. |
Spring 2012 Reaction Results | Additional sequencing reaction results for the D. ananassae sequence improvement projects in Spring 2012. |
Finishing Repository - Drosophila mojavensis Control Region
Link to Directory | Description |
---|---|
Finishing Packages | Finishing packages containing the project files for all the D. mojavensis fosmid projects. |
Spring 2010 Reaction Results | Additional sequencing reaction results for the D. mojavensis sequence improvement projects in Spring 2010. |
Spring 2011 Reaction Results | Additional sequencing reaction results for the D. mojavensis sequence improvement projects in Spring 2011. |
Finishing Repository - Drosophila grimshawi
Link to Directory | Description |
---|---|
Finishing Packages | Finishing packages containing the project files for all the D. grimshawi fosmid projects. |
Spring 2009 Reaction Results | Additional sequencing reaction results for the D. grimshawi sequence improvement projects in Spring 2009. |
Spring 2010 Reaction Results | Additional sequencing reaction results for the D. grimshawi sequence improvement projects in Spring 2010. |
- Current Projects
- Project Management System
- GEP UCSC Browser Mirror
- Gene Model Checker
- Gene Record Finder
- Small Exon Finder
- Core Promoter Motifs
- BLAST Viewer Generator
- Annotation Files Merger
- Sequence Updater
- EMBOSS Tools
- Finishing - 2014 Reactions Download
- Finishing - Digest Viewer
- GEP Data Repository
- Demo Systems
- Tools Under Development