Genomics Education Partnership

Sponsored by the University of Alabama, Washington University in St. Louis, NSF, and NIH

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GEP Data Repository

About This Page

The Data Repository contains links to all the files for the GEP annotation and finishing projects. The tables below provides a brief explanation for some of the files you will find in the repository.

Table Of Contents

  1. TSS Repository
  2. Annotation Repository
  3. Finishing Repository - Hybrid Assemblies
  4. Finishing Repository - Drosophila mojavensis Control Region
  5. Finishing Repository - Drosophila ananassae Muller F element (2011-2012)
  6. Finishing Repository - Drosophila grimshawi

TSS Repository

Link to Directory Description
tss / drosophila_elegans / dot_chromosome Files for the Jan. 2015 D. elegans dot chromosome TSS projects. (TSS projects created in January 2018.)
tss / drosophila_biarmipes / dot_chromosome_v2 Files for the Aug. 2013 D. biarmipes dot chromosome TSS projects. (TSS projects created in August 2015.)
tss / drosophila_biarmipes / 3L_control Files for the Jan. 2014 D. biarmipes 3L chromosome control region TSS projects. (TSS projects created in August 2017.)

Annotation Repository

Link to Directory Description
drosophila_ananassae / Muller_D Files for the D. ananassae Muller D element annotation projects (Mar. 2020 release).
drosophila_ananassae / Muller_F Files for the D. ananassae Muller F element annotation projects (Sep. 2019 release).
drosophila_takahashii / dot_chromosome Files for the D. takahashii dot chromosome annotation projects (Jan. 2018 release).
drosophila_takahashii / 3L_control Files for the D. takahashii 3L chromosome control region annotation projects (Aug. 2018 release).
drosophila_takahashii / 2L_control Files for the D. takahashii 2L chromosome control region annotation projects (Jan. 2019 release).
drosophila_eugracilis / dot_chromosome Files for the D. eugracilis dot chromosome annotation projects (Jan. 2017 release).
drosophila_eugracilis / 3L_control Files for the D. eugracilis 3L chromosome control region annotation projects (Aug. 2017 release).
drosophila_ficusphila / dot_chromosome Files for the D. ficusphila dot chromosome annotation projects (Jan. 2016 release).
drosophila_ficusphila / 3L_control Files for the D. ficusphila 3L chromosome control region annotation projects (Aug. 2016 release).
drosophila_elegans / dot_chromosome Files for the D. elegans dot chromosome annotation projects (Jan. 2015 release).
drosophila_elegans / 3L_control Files for the D. elegans 3L chromosome control region annotation projects (Aug. 2015 release).
drosophila_biarmipes / dot_chromosome_v2 Files for the D. biarmipes dot chromosome annotation projects (Aug. 2013 release).
drosophila_biarmipes / 3L_control Files for the D. biarmipes 3L chromosome control region annotation projects (Jan. 2014 release).
drosophila_biarmipes / dot_chromosome Files for the D. biarmipes dot chromosome annotation projects (Aug. 2012 release). (This assembly has been replaced by the Aug. 2013 release.)
drosophila_ananassae / 3L_control Files for the D. ananassae 3L chromosome control region annotation projects (Jan. 2013 release).
drosophila_erecta / dot_chromosome Files for the D. erecta dot chromosome annotation projects (Aug. 2006 release).
drosophila_erecta / 3L_control Files for the D. erecta 3L chromosome control region annotation projects (Apr. 2007 release).
drosophila_erecta / 2nd3L_control Files for the second D. erecta 3L chromosome control region annotation projects (Nov. 2011 release).
drosophila_erecta / 3L_extended Files for the D. erecta 3L chromosome extended region annotation projects (Jan. 2008 release).
drosophila_erecta / 3L_extended2 Files for the second D. erecta 3L chromosome extended region annotation projects (Sep. 2011 release).
drosophila_mojavensis / dot_chromosome Files for the D. mojavensis dot chromosome (Sep. 2008 release).
drosophila_mojavensis / 3L_control Files for the D. mojavensis 3L chromosome control region (Apr. 2011 release).
drosophila_grimshawi / dot_chromosome Files for the D. grimshawi dot chromosome (Sep. 2010 release).

Finishing Repository - Hybrid Assemblies

Link to Directory Description
D. takahashii Finishing Packages Finishing packages containing the project files for all the D. takahashii assemblies.
D. eugracilis Finishing Packages Finishing packages containing the project files for all the D. eugracilis assemblies.
D. ficusphila Finishing Packages Finishing packages containing the project files for all the D. ficusphila assemblies.
D. elegans Finishing Packages Finishing packages containing the project files for all the D. elegans assemblies.
D. biarmipes Finishing Packages Finishing packages containing the project files for all the D. biarmipes assemblies.
Spring 2014 Reaction Results Additional sequencing reaction results for the D. biarmipes sequence improvement projects in Spring 2014.

Finishing Repository - Drosophila ananassae Muller F element (2011-2012)

Link to Directory Description
Finishing Packages Finishing packages containing the project files for all the D. ananassae fosmid projects.
Spring 2011 Reaction Results Additional sequencing reaction results for the D. ananassae sequence improvement projects in Spring 2011.
Spring 2012 Reaction Results Additional sequencing reaction results for the D. ananassae sequence improvement projects in Spring 2012.

Finishing Repository - Drosophila mojavensis Control Region

Link to Directory Description
Finishing Packages Finishing packages containing the project files for all the D. mojavensis fosmid projects.
Spring 2010 Reaction Results Additional sequencing reaction results for the D. mojavensis sequence improvement projects in Spring 2010.
Spring 2011 Reaction Results Additional sequencing reaction results for the D. mojavensis sequence improvement projects in Spring 2011.

Finishing Repository - Drosophila grimshawi

Link to Directory Description
Finishing Packages Finishing packages containing the project files for all the D. grimshawi fosmid projects.
Spring 2009 Reaction Results Additional sequencing reaction results for the D. grimshawi sequence improvement projects in Spring 2009.
Spring 2010 Reaction Results Additional sequencing reaction results for the D. grimshawi sequence improvement projects in Spring 2010.