About This Page
The following documents describe specific issues pertinent to GEP annotation projects.
Specific Issues in GEP Annotation Projects
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Annotation for D. virilis
This is a PowerPoint presentation describing the recommended strategies for annotating a D. virlis fosmid. The homology-based annotation strategy should also be applicable to annotation of D. erecta and D. mojavensis projects.
- Last update: 08/11/2011
- Tags: Annotation strategy
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Annotating Splice Sites: Workflow
A one-page summary of the logic process for identifying appropriate splice sites when annotating.
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PDF- Last update: 08/27/2010
- Tags: Annotation strategy Splice sites Workflow
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GEP Annotation Report
This document is the revised annotation report that GEP students will use to report their annotation results to the GEP.
- Last update: 08/25/2010
- Tags: Annotation Checklist Project submission
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Annotation Instruction Sheet
This document is a more in depth description of the evidence based annotation technique used by the GEP. This document is designed to complement and extend the basic technique described in the Annotation for D. virilis powerpoint.
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PDF- Last update: 12/06/2010
- Tags: Annotation strategy Ensembl FlyBase
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Annotation Strategy Guide
This document illustrates how the strategies outlined in the Annotation Instruction Sheet can be applied to more challenging annotation cases.
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PDF- Last update: 10/01/2011
- Tags: Annotation strategy
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Drosophila: Annotation Goals: Final Presentation and Written Reports
This document describes the primary annotation goals to be included in the final oral presentation and written report for students enrolled in the Bio4342 course at WU.
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PDF- Last update: 04/01/2008
- Tags: Sample curriculum Student report
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About Synteny Analysis
A one-page summary of the logic process used to determine if genes in a fosmid is syntenic with respect to D. melanogaster.
- Last update: 01/10/2011
- Tags: FlyBase Reference Sheet Synteny
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Web Databases for Drosophila
This PowerPoint presentation introduces the species-specific databases available on the web, including Flybase and the Ensembl Drosophila melanogaster database.
- Last update: 01/11/2012
- Tags: Annotation strategy Ensembl FlyBase
